ExpressAnalyst

Upload a gene expression table

ExpressAnalyst currently supports gene expression profiling and functional analysis for 28 organisms including 11 model species, 5 pathogens and 12 ecological species. In addition, ExpressAnalyst also supports generic annotation based on KEGG orthologs (KO), as well as custom annotation. If your organism is not within the list, leave the organism unspecified. For unspecified organism/ID and custom annotation, you won't be able to perform functional enrichment analysis but you can still perform basic expression profiling such as differential analysis, volcano plot, heatmap clustering, etc.

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Data	Parameter	Description
Endotoxin	Illumina BeadArrays - Refseq ID, normalized, log 2 scale (12 samples)	Gene expression in human PBMC using LPS as inducer (details) Treatment: Control, LPS, LPS_LPS; Donor: 21, 46, 86, 92
C. japonica toxicity	RNAseq data (Entrez Gene ID), raw counts (15 samples)	Gene expression response in C. japonica from an early life stage toxicity experiment Treatment: Control, Medium, High;
Non-model organisms	RNAseq data (Seq2Fun ID), raw counts (17 samples)	Comparative transcriptomics of limb regeneration (details) Time: Time0, Time24; Species: A. mexicanum (MEX), A. andersoni (AND), A. maculatum (MAC).
Diabetes (RNA-seq) Metadata	RNAseq data (Ensembl Gene ID), raw counts (133 samples)	Transcriptomics along spectrum of diabetes progression (details). 5 metadata: Diagnosis, Age, OGTT, HbA1c, and BMI.
Diabetes (proteomics) Metadata	Proteomics data (Official Gene Symbol), raw abundance intensity (10 samples)	Proteomics along spectrum of diabetes progression (details). 5 metadata: Diagnosis, Age, OGTT, HbA1c, and BMI.
Bromobenzene (dose response)	Microarray data (Entrez), log transformed (30 samples).	Microarray data to study dose-response effect of bromobenzene on Rat liver after two weeks (details). Doses: 25, 100, 200, 300, and 400 mkd.
Mouse liver Metadata	RNA-seq data (Gene Symbol), raw counts (16 samples).	RNA-seq data to study effect of Bisphenol-A exposure during pregnancy on Mouse liver of offsprings of both sexes (details). 13 Metadata: Treatment and Sex, plus 11 other continuous metadata of targeted lipids measurement in liver and plasma.