Publications

1. Ewald J., Zhou, G., Lu, Y., Kolic, J., Ellis, C., Johnson, J.D., Macdonald P.E. and Xia, J. (2024) Web-based multi-omics integration using the Analyst software suite Nature Protocols (2024)
   -- 31 pages containing step-by-step instructions for multi-omics data analysis using ExpressAnalyst, MetaboAnalyst, OmicsNet and OmicsAnalyst
2. Ewald J., Zhou, G., Lu, Y., and Xia, J. (2023) Using ExpressAnalyst for Comprehensive Gene Expression Analysis in Model and Non‐Model Organisms Current Protocols 3 (11), e922
   -- 76 pages containing step-by-step instructions for 11 common tasks in transcriptomic data analysis
3. Liu, P., Ewald J., Legrand E., Jeon, Y.S., Sangiovanni, J., Hacariz, O., Pang, Z., Zhou, G., Head, J., Basu, N., and Xia, J. (2023) ExpressAnalyst: a unified platform for RNA-sequencing analysis in non-model species Nature Communications 14, 2995
   -- the design, implementation, & validation of the web-based platform
4. Liu, P., Ewald, J., Galvez, J. H., Head, J., Crump, D., Bourque, G., Basu, N., and Xia, J. (2021) Ultrafast functional profiling of RNA-seq data for nonmodel organisms Genome Research 31, 713-720
   -- the algorithm underlying RNAseq processing & annotation for non-model species